Caribe - Caribe - Maestría en Ciencias - Biología · 2026
Cryptic reef fish lineages in the western Atlantic, an opportunity to glimpse geographical patterns of diversification: Haemulon aurolineatum as a case study
Understanding the spatial scale and structure of marine connectivity is essential for uncovering how ocean currents shape gene flow, population structure, and larval transport in reef organisms. I examined range-wide patterns of gene flow and population structure in the tomtate (Haemulon aurolineatum), an abundant reef fish with a broad distribution from southern Brazil to Bermuda in the western Atlantic. I used genome-wide Single Nucleotide Polymorphisms (SNPs), mitochondrial DNA sequences, and a re-evaluation of morphological variation to assess connectivity, demographic history, and lineage boundaries across 22 locations spanning all major biogeographic provinces within the species’ range. Population structure and phylogenetic analyses identified three main genetic groups: (1) the Caribbean and Southwestern Atlantic (CSA), (2) the Gulf of Mexico (GOM), and (3) Bermuda (BDA), with further substructure within CSA. Demographic modeling and migration analyses supported early divergence followed by sustained but asymmetric gene flow, particularly into BDA, which acts as a long-term demographic sink, likely maintained by episodic larval input from CSA and GOM. This pattern aligns with previous findings from biophysical models and larval transport studies. Recognized marine barriers such as the Eastern and Western Caribbean breaks contributed to population differentiation, while coastal corridors along Brazil and the Guianas facilitated northward gene flow. Coalescent-based species delimitation supported three species-level lineages, but we interpret these as subspecies: morphologically and genomically distinct, yet not fully reproductively isolated. Taken together, these results demonstrate how asymmetric dispersal and oceanographic isolation can structure genetic diversity in marine organisms by creating peripheral demographic sinks like Bermuda, where limited and unidirectional connectivity promotes long-term differentiation—a pattern we describe as the “Bermuda Triangle effect”.
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Contenido
- Introductionp. 16
- 2. Materials and Methodsp. 20
- 2.1 Sample collectionp. 20
- 2.2 ddRADseq library preparation and sequencing; mitochondrial sequencesp. 22
- 2.3 SNP filtering, assembly and SNPs callingp. 22
- 2.4 Population structure analysesp. 24
- 2.5 Multivariate analyses of morphological traitsp. 25
- 2.6 Phylogenetic tree and species delimitationp. 26
- 2.7 Directional gene flow and spatial variation in migration ratesp. 27
- 2.8 Demographic modellingp. 28
- 3. Resultsp. 30
- 3.1 Overview of genomic datasetsp. 30
- 3.2 Population Genetic Structurep. 31
- 3.3 Multivariate analysis of morphological variation among major populationsp. 34
- 3.4 Phylogenetic tree and species delimitationp. 26
- 3.5 Directional gene flow and spatial variation in migration ratesp. 38
- 3.6 Demographic modellingp. 28
- Discussionp. 43
- connectivityp. 34
- 4.2 Relative effectiveness of oceanographic barriers to gene flowp. 45
- the origin of Bermuda’s lineagep. 46
- delimitationp. 49
- Conclusionsp. 50
- Supplemental Informationp. 52
- Supplementary notesp. 52
- 2. Supplementary tablesp. 53
- 3. Supplementary figuresp. 73
- Referencesp. 90
- Figure 1. Sampling locations of Haemulon aurolineatum across the WAp. 21
- Figure 2. Population structure of Haemulon aurolineatump. 33
- Figure 3. Results of morphological multivariate analysesp. 35
- gene COI treep. 37
- Figure 5. Relative migration network and effective migration and diversity ratesp. 39
- hypotheses testedp. 42
- of Wisconsin Biotechnology Center (UWBC)p. 52
- studyp. 44
- Table S2. Forward and reverse primers used for COI amplification and sequencingp. 62
- Table S3. Haemulon COI sequences retrieved from NCBI and BOLD databasesp. 63
- Table S4. Parameter optimization for ddRAD data assembly in IPYRADp. 67
- aurolineatump. 68
- hypothesisp. 69
- Table S8. Meristic and morphometric data of Haemulon aurolineatump. 70
- values into biologically meaningful unitsp. 72
- (PstI/MspI) for ddRAD library preparationp. 74
- preparation (96 samples per plate)p. 74