Doctorado en Biociencias · 2019
Bioprospecting study of cultivable prokaryotic fraction from Manaure solar saltern, La Guajira, Colombia
The objective of this research was to establish the bioprospecting potential of the cultivable bacteria isolated from the Manaure Solar Saltern in La Guajira, Colombia. To achieve this, a strategy of mixed cultures was implemented to evaluate the cytotoxic and antibacterial activity of their crude extracts. The best bioactive mixed culture was selected, and their isolates were obtained and characterized. The results from the biological assays with the crude extracts of the isolates grown individually led to establish that the halophilic bacterium Vibrio diabolicus A1SM3 was responsible for the biological activity of the mixed culture. From the bioguided fractionation of this extract and its analysis by HPLC-MS/MS and NMR, the isotrisindoline was identified as the compound responsible for the cytotoxic and antibacterial activity. After that, variations on the carbon and nitrogen source, and the salinity of the medium were made to determine how they affected the isotrisindoline production. The MS/MS data obtained from the crude extracts of these cultures were analyzed through molecular networking in order to establish the effect of these variations. In addition to this, it was possible to identify that this microorganism produces polyhydroxybutyrates, a biopolymer widely produced and accumulated by Vibrio species with great applications in the plastics industry. Finally, by sequencing the genome of Vibrio diabolicus A1SM3, the biosynthetic gene cluster associated with the production of this biopolymer was annotated.
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Contenido
- INTRODUCTIONp. 13
- REFERENCESp. 15
- OBJECTIVESp. 17
- General objectivep. 17
- Specific objectivesp. 17
- 1. ABSTRACTp. 18
- 2. BACKGROUNDp. 19
- 3. METHODSp. 21
- Samplingp. 21
- Growth and enrichment of mixed culturesp. 21
- Extraction and characterization of crude extractsp. 22
- Antibacterial activityp. 22
- Cytotoxic activityp. 23
- Enrichment, isolation and characterization of bacteria from mixed culturesp. 23
- Amplification and sequencing of the 16S rRNA genep. 24
- MALDI-TOF MS analysisp. 25
- Bioautography of a bioactive extract of Vibrio sp. A1SM3-36-8p. 25
- Isolation and identification analysisp. 26
- 4. RESULTSp. 26
- Bioactivity of mixed culturesp. 26
- Isolation of microorganisms from mixed cultures and bioactivity assaysp. 27
- Identification of isolatesp. 28
- Characterization of Vibrio sp. A1SM3-36-8p. 30
- Isolation and identification of a bioactive fraction from Vibrio sp. A1SM3-36-8p. 31
- 5. DISCUSSIONp. 34
- 6. CONCLUSIONp. 36
- 7. DECLARATIONSp. 37
- Ethics approval and consent to participatep. 37
- Consent for publicationp. 37
- Availability of data and materialp. 37
- Competing interestsp. 37
- Fundingp. 37
- Author contributionsp. 37
- Acknowledgmentsp. 38
- 8. REFERENCESp. 15
- 9. ADDITIONAL FILESp. 42
- Additional file 1p. 42
- Additional file 2p. 43
- Additional file 3p. 43
- Additional file 4p. 44
- 1. ABSTRACTp. 18
- 2. INTRODUCTIONp. 13
- 3. RESULTSp. 26
- Growth of Vibrio diabolicus A1SM3 in modified culture mediap. 48
- Study of the metabolic profile of Vibrio diabolicus A1SM3 in the modified culture mediap. 50
- mediump. 22
- Molecular networking and isotrisindoline productionp. 54
- Polyhydroxybutyrates (PHB) molecular familyp. 55
- 4. DISCUSSIONp. 34
- 5. MATERIALS AND METHODSp. 62
- Vibrio diabolicus A1SM3 strain: crude extract production and fractionationp. 62
- Cytotoxic activityp. 23
- Modified culture media and metabolite extraction of Vibrio diabolicus A1SM3 culturesp. 63
- HPLC-MS/MS analysisp. 63
- HPLC-MS data processingp. 64
- MS/MS data processing for molecular networkingp. 64
- NMR analysisp. 65
- Statistical analysisp. 65
- 6. REFERENCESp. 15
- 7. SUPPLEMENTARY MATERIALSp. 70
- Author contributionsp. 37
- Fundingp. 37
- Acknowledgmentsp. 38
- Conflicts of Interestp. 77
- 1. ABSTRACTp. 18
- 2. INTRODUCTIONp. 13
- 3. MATERIALS AND METHODSp. 62
- Bacterial culture and DNA extractionp. 81
- Whole genome sequencing and assemblyp. 81
- Phylogenetic analysisp. 82
- Genome annotationp. 83
- 4. RESULTSp. 26
- Genome assembly and phylogenetic analysisp. 84
- Phenotypic characterizationp. 86
- Genome annotation and biosynthetic gene cluster analysisp. 87
- 5. DISCUSSIONp. 34
- 6. REFERENCESp. 15
- 7. SUPPLEMENTARY INFORMATIONp. 99
- GENERAL DISCUSSIONp. 101
- OVERALL CONCLUSION AND PERSPECTIVESp. 105
- REFERENCESp. 15